PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G07890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 164aa    MW: 18206.7 Da    PI: 10.2312
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G07890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.73.9e-2339128288
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle.leHnHe 88 
                      fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v+++ +++w v+++  ++H He
  OPUNC11G07890.1  39 FYCAYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCTyNDHVHE 128
                      9**************************************999988787999******************************986778776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2139128IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPLSAGDEDA AVPGPSSVGE PREPEAGMEF ASPEEARAFY CAYAARAGFR VRSSKSFASR  60
IDDAIIMRRF VCTRQGLPSR KDTLLDASKK RRNRASARAA CPAMLQVNRR PSSRWLVSRC  120
TYNDHVHEHA AVTIQLSTNL FNLLQEPHFL HQLPPPSTKK TALN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354591e-145AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
GenBankAC1380001e-145AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence.
GenBankAP0149671e-145AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615544.18e-54PREDICTED: protein FAR1-RELATED SEQUENCE 9
TrEMBLA0A0E0ME921e-119A0A0E0ME92_ORYPU; Uncharacterized protein
STRINGORGLA11G0071600.17e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2538033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-11FAR1-related sequence 12